Process Equipment and Skid Qualification, From FAT to PQ
A short, practical walkthrough of qualifying modular process skids and single-use systems — how much FAT can actually replace, and what extractables and leachables testing does and doesn't cover.
What makes qualifying a skid different from qualifying fixed equipment?
Process skids — bioreactors, TFF systems, chromatography skids, buffer prep units — are usually built and functionally tested at a vendor's facility before they ever reach the plant. That means qualification has to answer a boundary question fixed equipment doesn't raise: what did FAT actually prove, and what can only be proven after the skid is bolted to real plant utilities and control systems? Confusing thorough FAT for complete qualification is where most skid projects lose time later.
Defining the Skid Boundary Before Fabrication
The URS should draw a hard line around what the skid owns and what the facility owns.
The URS should specify battery limits (where the skid's piping and controls end and the facility's begin), utility tie-in points, and exactly which interlocks and control logic live on the skid's own PLC versus the plant's DCS or SCADA layer. This boundary definition drives the entire test strategy — anything fully contained within the skid can often be proven at FAT, while anything that spans the boundary can only be proven once both sides are actually connected.
For single-use systems integrated into the skid — bags, tubing, connectors, filter capsules — an extractables and leachables risk assessment should be scoped at this stage too, based on the specific product, contact time and process conditions, not assumed acceptable because the vendor supplied generic compatibility data.
IQ and OQ: What FAT Doesn't Cover
IQ and OQ at site should focus on what changes between the vendor's shop and the actual plant floor.
| Phase | What to Verify | Typical Evidence |
|---|---|---|
| IQ | Installation matches approved drawings; utility tie-ins connected | Drawings, installation checklists |
| IQ | Instrument calibration status post-transport | Calibration certificates, post-transport checks |
| OQ / SAT | Interlocks and control logic spanning the skid/facility boundary | Integrated functional test records |
| OQ / SAT | Integration with plant DCS/SCADA and historian | Data integration verification |
| OQ | Operating ranges and setpoints across intended process range | Functional test records |
PQ: Proving the Skid Performs Across Its Real Operating Range
Performance qualification confirms the skid holds process control once it's running actual or representative product.
For a bioreactor skid, PQ typically demonstrates consistent control of pH, dissolved oxygen, agitation and temperature across the range the process actually uses, not just at a single nominal setpoint. For a chromatography or TFF skid, PQ demonstrates flow, pressure and detection accuracy hold steady across representative runs. Three representative runs across the defined operating range is a common convention, though the number should be justified by the process risk the skid needs to demonstrate control over.
Where the skid was fabricated and FAT-tested by a vendor, leveraging that FAT data under ASTM E2500 can meaningfully reduce duplicate testing at OQ — but only for functions FAT could actually exercise in isolation. Anything dependent on the final facility connection still needs its own verification, no matter how comprehensive the vendor's FAT was.
Extractables, Leachables and Single-Use System Integrity
Single-use components carry a qualification burden fixed stainless systems don't — proving the plastic itself doesn't compromise the product.
Extractables data — what a material could release under aggressive, worst-case lab conditions — is usually available from the vendor and can support an initial risk assessment. Leachables — what the material actually releases into the specific product under real process conditions — often need product-specific verification when contact time, temperature or solvent characteristics differ meaningfully from the vendor's test conditions. Treating vendor extractables data as automatically sufficient leachables evidence is a common, avoidable gap that BPOG's risk-based E&L framework is designed to help scope correctly.
Integrity testing is the other half: single-use bags and tubing can't be inspected or leak-tested the way permanent piping can, so each unit — or a defined sample per lot — needs a non-destructive integrity test, commonly pressure decay, before use. Skipping this because the system is "disposable, so lower risk" removes the one check that confirms the bag or connector wasn't compromised during shipping or setup.
Where Skid Qualification Goes Wrong
A handful of recurring gaps account for most skid-related audit findings.
The most common issue is treating comprehensive FAT as equivalent to full qualification, under-testing the boundary interlocks that only exist once the skid is connected to the plant. A close second is using generic vendor extractables data as if it were product-specific leachables evidence. Teams also skip single-use integrity testing assuming disposable components carry lower risk, and leave skid/facility interlock ownership undefined until commissioning, when it's far more expensive to resolve.
Process Equipment & Skid Qualification FAQs
What's the difference between FAT and SAT for a process skid?
FAT happens at the vendor's facility, confirming the skid works in isolation. SAT happens on site, re-verifying what FAT couldn't test — utility tie-ins, plant control system integration, and any transport-related issues.
Can FAT data be fully leveraged to reduce IQ/OQ testing?
Yes, when performed under a documented quality-oversight program per ASTM E2500. But anything affected by transport, installation or final utility connection still needs on-site verification.
Do single-use systems need extractables and leachables testing for every product?
Not always from scratch. Generic vendor data supports initial risk assessment, but product-specific verification is often warranted when contact time or process conditions differ meaningfully from the vendor's test conditions.
How is single-use bag or tubing integrity verified before use?
Through a non-destructive integrity test, commonly pressure decay, on each unit or a defined sample per lot — since single-use systems can't be inspected the way hard-piped systems can.
Who owns interlocks and control logic that span the skid and facility boundary?
This should be defined in the URS and tested twice — isolated during FAT, then integrated with the actual plant DCS or SCADA during SAT or OQ.
How many PQ runs are needed for a bioreactor or chromatography skid?
There's no fixed universal number, but three representative runs across the operating range is a common convention, justified by the skid's process risk.
How does GoVal support process equipment and skid qualification?
GoVal tracks FAT/SAT documentation and leverage decisions in one place, links vendor protocols to site-specific acceptance criteria, and maintains audit trails for E&L data and single-use integrity testing.
Key References
- ASTM E2500 — Standard Guide for Specification, Design and Verification of Pharmaceutical and Biopharmaceutical Manufacturing Systems and Equipment
- ISPE Baseline Guide, Volume 5 — Commissioning and Qualification
- BioPhorum (BPOG) — Extractables and Leachables Best Practices Guide
- USP <665> / <1665> — Plastic Components and Systems Used in Manufacturing